STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET1114Type III restriction-modification system, restriction endonuclease subunit; Identified by similarity to SP:P08764. (1019 aa)    
Predicted Functional Partners:
DET1112
Type III restriction-modification system, methylase subunit; Identified by similarity to SP:P40814.
  
 0.980
DET1109
Helicase domain/SNF2 family domain protein; Identified by match to protein family HMM TIGR01612.
 
     0.954
DET1110
Conserved hypothetical protein; Identified by similarity to GP:26111617.
 
     0.944
DET1113
Conserved domain protein; Identified by similarity to OMNI:NTL01MM2811.
       0.773
DET1111
ATP-binding protein, putative; Identified by similarity to SP:Q9PRB1; match to protein family HMM PF04326.
       0.761
DET1108
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03SP0465.
       0.667
DET1115
Type II restriction endonuclease, putative.
       0.651
DET1116
Sugar fermentation stimulation protein, putative; Belongs to the SfsA family.
       0.651
DET1107
Conserved domain protein; Identified by similarity to GP:29341852.
       0.640
DET1117
Hypothetical protein; Identified by Glimmer2; putative.
       0.634
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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