STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
DET1124Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. (112 aa)    
Predicted Functional Partners:
amt
Ammonium transporter; Identified by similarity to SP:Q07429; match to protein family HMM TIGR00836.
 
 
 0.998
argB
Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.
    
 
 0.796
DET1631
TPR domain protein; Identified by match to protein family HMM PF00515.
    
 
 0.794
nadE
Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
     
 0.692
glnA
Glutamine synthetase, type I; Identified by similarity to SP:Q59812; match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653; Belongs to the glutamine synthetase family.
  
  
 0.622
DET1127
Conserved hypothetical protein; Identified by similarity to OMNI:TM0394.
     
 0.517
gltB
Glutamate synthase, alpha subunit, putative; Belongs to the glutamate synthase family.
     
 0.517
DET1130
Glutamine amidotransferase, class II; Identified by similarity to SP:O29310; match to protein family HMM PF00310.
     
 0.517
DET1131
Pyridine nucleotide-disulfide oxidoreductase family protein.
     
 0.491
DET1126
Transcriptional regulator; Identified by similarity to SP:Q05943.
       0.486
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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