STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amtAmmonium transporter; Identified by similarity to SP:Q07429; match to protein family HMM TIGR00836. (408 aa)    
Predicted Functional Partners:
DET1124
Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
 
 
 0.998
DET1156
Nitrogen regulatory protein P-II; Identified by match to protein family HMM PF00543; Belongs to the P(II) protein family.
  
 
 0.935
DET1157
Nitrogen regulatory protein P-II; Identified by similarity to SP:Q50786.
  
 
 0.935
glnA
Glutamine synthetase, type I; Identified by similarity to SP:Q59812; match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653; Belongs to the glutamine synthetase family.
  
  
 0.769
nadE
Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
     
 0.711
DET1127
Conserved hypothetical protein; Identified by similarity to OMNI:TM0394.
  
  
 0.689
gltB
Glutamate synthase, alpha subunit, putative; Belongs to the glutamate synthase family.
     
 0.652
DET1130
Glutamine amidotransferase, class II; Identified by similarity to SP:O29310; match to protein family HMM PF00310.
     
 0.652
DET1131
Pyridine nucleotide-disulfide oxidoreductase family protein.
  
  
 0.643
nifH
Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein.
  
  
 0.621
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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