STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET1140Carbon-nitrogen hydrolase family protein. (258 aa)    
Predicted Functional Partners:
cobA-2
cob(I)alamin adenosyltransferase; Identified by similarity to GP:11513599.
       0.773
DET1141
Glycosyl transferase/polysaccharide deacetylase family protein; Identified by match to protein family HMM PF01522.
  
    0.685
cobD-4
Cobalamin biosynthesis protein CobD; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.
       0.655
DET0715
Metallopeptidase, M24 family; Identified by similarity to SP:P76524; similarity to GP:1915907; Belongs to the peptidase M24B family.
  
 
  0.639
DET1142
Hypothetical protein; Identified by Glimmer2; putative.
       0.633
DET1137
Radical SAM domain protein.
 
     0.594
DET0571
Hypothetical protein; Identified by Glimmer2; putative.
    
  0.585
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
   
 
 0.554
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
  
  
 0.407
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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