STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET1141Glycosyl transferase/polysaccharide deacetylase family protein; Identified by match to protein family HMM PF01522. (481 aa)    
Predicted Functional Partners:
DET1631
TPR domain protein; Identified by match to protein family HMM PF00515.
  
 
 0.897
DET0208
Glycosyl transferase, group 2 family protein.
 
  
 0.777
DET1142
Hypothetical protein; Identified by Glimmer2; putative.
       0.762
DET0203
Glycosyl transferase, group 2 family protein.
 
  
0.725
DET0202
Histidinol-phosphate phosphatase family protein/glycosyl transferase, group 2 family protein; Identified by match to protein family HMM TIGR01656; match to protein family HMM TIGR01662.
  
  
 0.721
DET1140
Carbon-nitrogen hydrolase family protein.
  
    0.685
cobA-2
cob(I)alamin adenosyltransferase; Identified by similarity to GP:11513599.
       0.642
DET0233
Sensory box sensor histidine kinase; Identified by similarity to OMNI:NTL02MA3318; match to protein family HMM TIGR00229.
 
  
 0.637
DET0301
Sensory box sensor histidine kinase; Identified by match to protein family HMM TIGR00229.
 
  
 0.635
DET0204
NAD-dependent epimerase/dehydratase family protein.
 
  
 0.630
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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