STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET1263DAK2 domain protein. (544 aa)    
Predicted Functional Partners:
DET1264
degV family protein; Identified by similarity to GP:28202560; match to protein family HMM TIGR00762.
   0.996
DET1265
degV family protein; Identified by similarity to GP:29895885; match to protein family HMM TIGR00762.
   0.995
DET1266
degV family protein; Identified by similarity to SP:P70945; match to protein family HMM TIGR00762.
   0.992
DET1267
degV family protein; Identified by similarity to GP:28202560; match to protein family HMM PF02645; match to protein family HMM TIGR00762.
   0.992
DET0421
degV family protein; Identified by similarity to GP:28202560; match to protein family HMM TIGR00762.
   0.985
DET0105
degV family protein; Identified by similarity to GP:28202560; match to protein family HMM TIGR00762.
   0.984
DET1032
Identified by match to protein family HMM TIGR00762.
   0.966
rpmB
Ribosomal protein L28; Identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family.
       0.580
recG
ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
  
    0.553
recN
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.
   
    0.437
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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