STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET1293Sensory box sensor histidine kinase; Identified by match to protein family HMM TIGR00229. (394 aa)    
Predicted Functional Partners:
DET1294
DNA-binding response regulator; Identified by match to protein family HMM TIGR01764.
 
 
 0.881
DET0624
Response regulator; Identified by similarity to OMNI:TM0186; match to protein family HMM TIGR00277.
 
 
 0.799
DET0178
Sensor histidine kinase; Identified by similarity to SP:P35164.
  
 
   0.783
DET0130
Response regulator; Identified by similarity to SP:P13792.
  
 
   0.780
DET0135
DNA-binding response regulator; Identified by similarity to GB:BAA02453.1.
 
 
   0.760
DET0177
DNA-binding response regulator.
 
 
   0.734
DET0232
DNA-binding response regulator.
 
 
   0.723
DET1058
DNA-binding response regulator.
 
 
   0.723
DET1059
Sensor histidine kinase; Identified by similarity to GP:5764627.
 
 
 
0.720
DET0300
DNA-binding response regulator.
 
 
   0.689
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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