STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET1341Transcriptional regulator, AsnC family; Identified by similarity to SP:O07920. (160 aa)    
Predicted Functional Partners:
aspC
Aspartate aminotransferase; Identified by similarity to SP:P23034.
 
     0.928
DET1339
ABC transporter, ATP-binding protein; Identified by similarity to OMNI:NTL02MA1555.
  
    0.489
DET1337
Membrane protein, putative; Identified by similarity to OMNI:NTL01MM0928.
       0.485
DET1338
DNA-binding protein; Identified by similarity to OMNI:MJ0272.
       0.485
DET1340
ABC transporter, permease protein, putative; Identified by similarity to OMNI:NTL01TT2342.
       0.485
DET0953
Copper-translocating P-type ATPase; Identified by similarity to SP:P37279; match to protein family HMM PF00403; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.
     
 0.451
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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