Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DET1353Type II secretion system protein, GspI/GspJ family; Identified by similarity to SP:P15749. (151 aa)    
Predicted Functional Partners:
DET1352
Pilin biogenesis protein, putative; Identified by similarity to SP:P45793.
  
  
 0.938
gspE
Type II secretion system protein GspE; Identified by similarity to GP:4139237; match to protein family HMM PF05157.
  
 
 0.937
DET1354
Type II secretion system protein, putative; Identified by similarity to OMNI:NTL01XA0698.
       0.773
DET1355
Hypothetical protein; Identified by Glimmer2; putative.
       0.671
DET0024
DNA internalization-related competence protein ComEC/Rec2; Identified by match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.
  
  
 0.617
DET1350
DNA-binding response regulator, LuxR family; Identified by similarity to SP:P13800.
  
    0.505
DET1358
Type IV pilus assembly family protein; Identified by similarity to OMNI:NTL03PA05045.
  
  
 0.503
DET1356
Hypothetical protein; Identified by Glimmer2; putative.
       0.473
DET1349
DNA-binding protein, excisionase family; Identified by match to protein family HMM TIGR01764.
       0.459
ssb
Single-strand binding protein; Identified by match to protein family HMM TIGR00621.
   
    0.451
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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