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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET1358Type IV pilus assembly family protein; Identified by similarity to OMNI:NTL03PA05045. (485 aa)    
Predicted Functional Partners:
DET1352
Pilin biogenesis protein, putative; Identified by similarity to SP:P45793.
 
 
 
 0.878
gspE
Type II secretion system protein GspE; Identified by similarity to GP:4139237; match to protein family HMM PF05157.
 
 
 
 0.860
pilT-3
Twitching mobility protein; Identified by similarity to SP:P24559; match to protein family HMM TIGR01420.
 
   
 0.825
DET1356
Hypothetical protein; Identified by Glimmer2; putative.
       0.784
DET1357
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
DET0352
Conserved hypothetical protein; Identified by similarity to GB:BAC73118.1.
  
     0.695
DET0754
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.663
DET0622
Radical SAM domain protein.
  
     0.608
mpgSP
Mannosyl-3-phosphoglycerate synthase/mannosyl-3-phosphoglycerate phosphatase; Identified by similarity to GP:28950684; similarity to GP:28950685; match to protein family HMM TIGR01484.
  
     0.596
DET0024
DNA internalization-related competence protein ComEC/Rec2; Identified by match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.
  
   
 0.568
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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