STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET1436Transcription regulator, TetR family. (125 aa)    
Predicted Functional Partners:
DET1437
Hypothetical protein; Identified by Glimmer2; putative.
       0.746
DET1438
Hypothetical protein; Identified by Glimmer2; putative.
       0.736
DET1580
Transcription regulator, TetR family.
  
     0.546
hypD
Hydrogenase expression/formation protein HypD; Identified by similarity to SP:P24192; match to protein family HMM PF01924; match to protein family HMM TIGR00075.
       0.480
hypC
Hydrogenase assembly chaperone HypC/HupF; Identified by similarity to GP:15430693; match to protein family HMM TIGR00074.
       0.478
hypF
[NiFe] hydrogenase maturation protein HypF; Identified by similarity to SP:O07451; match to protein family HMM TIGR00143.
       0.467
hypA
Hydrogenase nickel insertion protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
       0.465
hypB
Hydrogenase accessory protein HypB; Identified by similarity to SP:Q43949; match to protein family HMM PF01495; match to protein family HMM TIGR00073.
       0.465
hypE
Hydrogenase expression/formation protein HypE; Identified by similarity to SP:P40595.
       0.465
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.441
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.