STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET1458comF family protein, putative; Identified by similarity to SP:P39147. (233 aa)    
Predicted Functional Partners:
DET0024
DNA internalization-related competence protein ComEC/Rec2; Identified by match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.
 
  
 0.855
DET0718
DNA processing protein DprA, putative; Identified by match to protein family HMM TIGR00732.
 
 
 0.834
DET1459
Ribosomal subunit interface protein, putative; Identified by match to protein family HMM TIGR00741.
  
    0.808
DET0460
Prephenate dehydrogenase.
   
  
 0.726
DET0986
Mg chelatase-like protein; Identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368.
 
  
 0.685
DET0572
DNA repair protein, RadC family; Identified by match to protein family HMM TIGR00608; Belongs to the UPF0758 family.
  
    0.660
DET1462
DNA repair protein, RadC family; Identified by match to protein family HMM TIGR00608; Belongs to the UPF0758 family.
  
    0.660
DET1457
Hypothetical protein; Identified by Glimmer2; putative.
       0.642
DET0781
Conserved hypothetical protein TIGR00252; Identified by similarity to SP:Q9HVZ1; match to protein family HMM PF02021; match to protein family HMM TIGR00252; Belongs to the UPF0102 family.
 
    0.571
ogt
methylated-DNA--protein-cysteine methyltransferase; Identified by match to protein family HMM TIGR00589.
       0.540
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.