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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET1495Conserved hypothetical protein; Identified by similarity to OMNI:NTL02MA3829. (273 aa)    
Predicted Functional Partners:
DET1494
Peptide ABC transporter, periplasmic peptide-binding protein; Identified by match to protein family HMM PF00496.
 
     0.817
DET1493
Peptide ABC transporter, permease protein.
 
     0.644
DET1490
Peptide ABC transporter, ATP-binding protein.
       0.596
DET1491
Peptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
       0.596
DET1492
Peptide ABC transporter, permease protein.
       0.596
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
 
 
 
 0.539
DET1496
Conserved hypothetical protein; Identified by similarity to GB:AAK04868.1.
       0.415
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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