STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET1513ATPase, AAA family protein; Belongs to the AAA ATPase family. (431 aa)    
Predicted Functional Partners:
DET1036
Serine protease, DegP/HtrA family; Identified by similarity to SP:P09376.
    
 0.917
DET1037
Serine protease, DegP/HtrA family; Identified by similarity to SP:O34358; similarity to SP:P09376.
    
 0.917
DET1285
Serine protease, DegP/HtrA family; Identified by similarity to SP:O34358.
    
 0.917
DET1286
Serine protease, DegP/HtrA family; Identified by similarity to SP:P09376; match to protein family HMM PF00089.
    
 0.917
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
    
  0.844
DET1631
TPR domain protein; Identified by match to protein family HMM PF00515.
   
  0.821
DET1179
ABC transporter, ATP-binding/permease protein; Identified by similarity to OMNI:NTL01TT2326.
    
  0.775
DET1180
ABC transporter, ATP-binding/permease protein; Identified by similarity to OMNI:NTL03CP0527.
 
  
  0.775
DET1512
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
DET1511
Hypothetical protein; Identified by Glimmer2; putative.
       0.741
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.