STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET1532Dinitrogenase iron-molybdenum cofactor family protein; Identified by match to protein family HMM PF02579. (130 aa)    
Predicted Functional Partners:
DET1533
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
DET1534
Reductive dehalogenase anchoring protein, putative; Identified by similarity to GP:27462922.
       0.737
nifH
Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein.
  
  
 0.710
DET1535
Reductive dehalogenase, putative; Identified by similarity to GP:8163916; match to protein family HMM TIGR01409.
       0.682
DET1501
Flavodoxin; Identified by similarity to SP:P18086.
 
     0.529
DET0007
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.424
DET1536
Transcriptional regulator, MarR family; Identified by similarity to GB:BAC71817.1.
       0.414
DET0951
nifU domain protein; Identified by similarity to SP:P05340; match to protein family HMM PF01592.
  
  
 0.412
modB
Molybdenum ABC transporter, permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
  
    0.407
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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