STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET1615HIT domain protein; Identified by match to protein family HMM PF01230. (163 aa)    
Predicted Functional Partners:
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.809
DET0183
ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by similarity to SP:P25888; Belongs to the DEAD box helicase family.
   
 
  0.798
thrS
threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). Also edits incorrectly charged L-seryl-tRNA(Thr).
    
 0.766
DET0330
Identified by match to protein family HMM PF00850.
    
  0.659
DET1614
Homocitrate synthase; Identified by similarity to SP:Q44290.
       0.518
DET1617
Conserved hypothetical protein; Identified by similarity to SP:O29392; Belongs to the UPF0145 family.
       0.492
DET1616
Transcriptional regulator, AbrB family; Identified by match to protein family HMM TIGR01439.
       0.475
DET1618
Hypothetical protein; Identified by Glimmer2; putative.
       0.453
DET1619
ABC transporter, ATP-binding protein; Identified by similarity to OMNI:NTL01TT2024.
       0.450
DET1620
Membrane protein, putative.
       0.450
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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