STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET1621Hypothetical protein; Identified by Glimmer2; putative. (446 aa)    
Predicted Functional Partners:
DET1619
ABC transporter, ATP-binding protein; Identified by similarity to OMNI:NTL01TT2024.
   
   0.678
DET1033
long-chain-fatty-acid--CoA ligase, putative; Identified by similarity to SP:P29212.
     
 0.676
DET1618
Hypothetical protein; Identified by Glimmer2; putative.
       0.661
DET1620
Membrane protein, putative.
       0.661
DET0571
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.660
DET1617
Conserved hypothetical protein; Identified by similarity to SP:O29392; Belongs to the UPF0145 family.
  
    0.625
DET1616
Transcriptional regulator, AbrB family; Identified by match to protein family HMM TIGR01439.
       0.623
secY
Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
    
 
 0.561
DET1622
Conserved hypothetical protein; Identified by similarity to OMNI:CT0707; match to protein family HMM PF03479.
       0.535
DET0812
PAP2 family protein.
    
 0.466
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.