STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET1622Conserved hypothetical protein; Identified by similarity to OMNI:CT0707; match to protein family HMM PF03479. (147 aa)    
Predicted Functional Partners:
DET1621
Hypothetical protein; Identified by Glimmer2; putative.
       0.535
DET0045
Redox family protein; Identified by similarity to OMNI:CT0642; match to protein family HMM TIGR01909.
  
     0.500
DET1618
Hypothetical protein; Identified by Glimmer2; putative.
       0.464
DET1619
ABC transporter, ATP-binding protein; Identified by similarity to OMNI:NTL01TT2024.
       0.464
DET1620
Membrane protein, putative.
       0.464
DET1616
Transcriptional regulator, AbrB family; Identified by match to protein family HMM TIGR01439.
       0.441
DET1617
Conserved hypothetical protein; Identified by similarity to SP:O29392; Belongs to the UPF0145 family.
       0.441
DET0198
Glutaredoxin family protein; Identified by similarity to SP:P23171.
  
     0.431
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
      
 0.410
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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