STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR_0020Ribonuclease II family protein; Similar to GB:AE000520 percent identity: 56.01; identified by sequence similarity; putative. (461 aa)    
Predicted Functional Partners:
rph
Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
   
 0.820
DR_0335
ATP-dependent RNA helicase, putative; Similar to SP:P23304 GB:M63288 GB:U03750 PID:432406 PID:606102 percent identity: 54.68; identified by sequence similarity; putative; Belongs to the DEAD box helicase family.
 
 
 0.624
DR_A0060
Conserved hypothetical protein; Similar to PID:1001216 PID:1001239 percent identity: 53.40; identified by sequence similarity; putative.
 
     0.593
DR_0019
Hypothetical protein; Identified by Glimmer2; putative.
       0.579
DR_0021
Hypothetical protein; Identified by Glimmer2; putative.
       0.575
DR_0018
Hypothetical protein; Identified by Glimmer2; putative.
       0.573
DR_0603
Cytidine/deoxycytidylate deaminase/nudix/methyltransferase domains protein; Similar to GB:D26185 SP:P21335 GB:X52144 PID:40011 PID:467408 percent identity: 49.28; identified by sequence similarity; putative.
  
 0.573
DR_0017
Conserved hypothetical protein; Similar to GP:3582247 percent identity: 51.81; identified by sequence similarity; putative.
       0.510
DR_0748
RNA methyltransferase, TrmH family; Similar to GB:D26185 SP:Q06753 GB:L14580 PID:467483 PID:532360 percent identity: 67.50; identified by sequence similarity; putative; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
  
   0.482
DR_1017
rRNA methylase; Similar to PID:1653441 percent identity: 51.76; identified by sequence similarity; putative; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
  
   0.482
Your Current Organism:
Deinococcus radiodurans
NCBI taxonomy Id: 243230
Other names: D. radiodurans R1, Deinococcus radiodurans R1, Deinococcus radiodurans str. R1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.