Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DR_0199Conserved hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection; Belongs to the YbaB/EbfC family. (96 aa)    
Predicted Functional Partners:
recR
recR protein; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
  
  
 0.977
DR_0200
Transcriptional regulator, Lrp/AsnC family; Similar to PID:1816639 percent identity: 55.28; identified by sequence similarity; putative.
  
    0.556
cinA
cinA protein; Similar to PID:2251087 percent identity: 100.00; identified by sequence similarity; putative; Belongs to the CinA family.
  
    0.524
DR_0197
Conserved hypothetical protein; Similar to GB:Z47047 SP:P40586 PID:600459 PID:763387 percent identity: 48.74; identified by sequence similarity; putative.
       0.516
hup
DNA-binding protein HB; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
  
  
 0.503
dnaX
DNA polymerase III, tau/gamma subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
  
  
 0.476
DR_2411
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.476
clpP
ATP-dependent Clp protease, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
  
  
 0.424
DR_1063
Peptidyl-prolyl cis-trans isomerase C; Similar to SP:P39159 PID:836657 PID:693800 GB:U00096 PID:1790211 percent identity: 50.65; identified by sequence similarity; putative.
  
    0.405
DR_2168
Sun protein, putative; Similar to SP:P94464 PID:1772501 PID:2337803 GB:AL009126 percent identity: 49.15; identified by sequence similarity; putative; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
 
    0.403
Your Current Organism:
Deinococcus radiodurans
NCBI taxonomy Id: 243230
Other names: D. radiodurans R1, Deinococcus radiodurans R1, Deinococcus radiodurans str. R1
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