STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR_0492Conserved hypothetical protein; Similar to GB:AL123456 percent identity: 53.00; identified by sequence similarity; putative. (101 aa)    
Predicted Functional Partners:
DR_0491
Conserved hypothetical protein; Similar to GB:U00096 PID:1736636 PID:1788278 percent identity: 45.22; identified by sequence similarity; putative.
       0.807
mutM
formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates (By similarity).
       0.612
pdxH
Pyridoxamine 5-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).
       0.588
DR_0494
DNA topology modulation protein FlaR-related protein; Similar to PID:1036788 percent identity: 57.58; identified by sequence similarity; putative.
       0.584
pcp
Pyrrolidone carboxyl peptidase; Removes 5-oxoproline from various penultimate amino acid residues except L-proline; Belongs to the peptidase C15 family.
       0.568
DR_0496
ferredoxin/ferredoxin--NADP reductase, putative; Similar to GB:AL123456 percent identity: 64.27; identified by sequence similarity; putative.
       0.426
DR_0497
L-serine dehydratase, beta subunit; Similar to GP:2315865 percent identity: 60.00; identified by sequence similarity; putative; Belongs to the iron-sulfur dependent L-serine dehydratase family.
       0.409
Your Current Organism:
Deinococcus radiodurans
NCBI taxonomy Id: 243230
Other names: D. radiodurans R1, Deinococcus radiodurans R1, Deinococcus radiodurans str. R1
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