STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR_0771Hypothetical protein; Identified by Glimmer2; putative. (238 aa)    
Predicted Functional Partners:
DR_0770
Fimbrial assembly protein PilM, putative; Similar to GB:U12892 PID:530856 percent identity: 53.56; identified by sequence similarity; putative.
  
 
 0.998
DR_0772
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.994
DR_0773
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.944
DR_0774
General secretion pathway protein D, putative; Could be part of the type IV piliation system (T4P). May contribute at the cohesion between the S-layer and the outer membrane by forming oligomers. Could also be the main channel through which trafficking is managed; Belongs to the bacterial secretin family.
     
 0.895
DR_1964
General secretion pathway protein E; Similar to GB:AE000657 percent identity: 67.99; identified by sequence similarity; putative.
  
 
 0.879
aroC
Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.
   
   0.661
DR_1863
Pilin biogenesis protein; Similar to GB:M32066 SP:P22609 PID:151066 percent identity: 64.91; identified by sequence similarity; putative.
   
 
 0.661
DR_2065
Prepilin peptidase, type IV; Similar to PID:1651714 percent identity: 62.89; identified by sequence similarity; putative.
     
 0.660
aroB
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).
  
    0.619
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
       0.598
Your Current Organism:
Deinococcus radiodurans
NCBI taxonomy Id: 243230
Other names: D. radiodurans R1, Deinococcus radiodurans R1, Deinococcus radiodurans str. R1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.