STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR_0799Glucose-fructose oxidoreductase; Similar to PID:1657417 percent identity: 61.56; identified by sequence similarity; putative. (398 aa)    
Predicted Functional Partners:
DR_0798
Acetyltransferase, putative; Similar to SP:P14507 PID:153586 percent identity: 54.93; identified by sequence similarity; putative.
       0.577
lysS
lysyl-tRNA synthetase; Similar to GB:X70708 SP:P41255 PID:486665 percent identity: 74.70; identified by sequence similarity; putative; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.560
DR_A0041
Thymidine diphosphoglucose 4,6-dehydratase; Similar to PID:567874 percent identity: 70.54; identified by sequence similarity; putative; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.558
DR_1561
UDP-N-acetylglucosamine 2-epimerase; Similar to GB:Z22516 SP:P39131 PID:405622 GB:AL009126 percent identity: 64.36; identified by sequence similarity; putative; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.514
DR_0728
Fructokinase; Similar to PID:2293420 percent identity: 55.36; identified by sequence similarity; putative.
 
  
 0.500
DR_0797
Hypothetical protein; Identified by Glimmer2; putative.
       0.482
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.482
DR_0796
Acetyltransferase, putative; Similar to SP:P14507 PID:153586 percent identity: 50.39; identified by sequence similarity; putative.
       0.481
DR_0795
Hypothetical protein; Identified by Glimmer2; putative.
       0.474
DR_0841
Conserved hypothetical protein; Possible metal-dependent hydrolase; Belongs to the metal hydrolase YfiT family.
 
    0.473
Your Current Organism:
Deinococcus radiodurans
NCBI taxonomy Id: 243230
Other names: D. radiodurans R1, Deinococcus radiodurans R1, Deinococcus radiodurans str. R1
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