Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DR_0989Cationic outer membrane protein OmpH, putative; Similar to GB:M34854 SP:P31519 PID:155479 percent identity: 49.63; identified by sequence similarity; putative. (176 aa)    
Predicted Functional Partners:
DR_0988
Hypothetical protein; Identified by Glimmer2; putative.
      
0.646
DR_0379
Outer membrane protein; Similar to PID:2231197 percent identity: 45.54; identified by sequence similarity; putative.
  
  
 0.626
DR_0990
Acetoin utilization protein, putative; Similar to GB:L17309 SP:P39066 PID:348051 PID:2293317 GB:AL009126 percent identity: 62.30; identified by sequence similarity; putative.
  
    0.626
DR_1507
Conserved hypothetical protein; Similar to GB:AL009126 percent identity: 56.19; identified by sequence similarity; putative; Belongs to the peptidase M50B family.
  
  
 0.422
rpmJ
Ribosomal protein L36; Binds the 23S rRNA.
   
    0.410
rpsM
Ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.
   
    0.408
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
    0.400
Your Current Organism:
Deinococcus radiodurans
NCBI taxonomy Id: 243230
Other names: D. radiodurans R1, Deinococcus radiodurans R1, Deinococcus radiodurans str. R1
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