Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DR_1012ABC transporter, ATP-binding protein; Similar to GB:AL009126 percent identity: 54.74; identified by sequence similarity; putative. (307 aa)    
Predicted Functional Partners:
DR_1013
Hypothetical protein; Identified by Glimmer2; putative.
 
 
 0.935
DR_2145
ABC transporter, ATP-binding protein; Similar to PID:1001916 SP:P50332 percent identity: 50.12; identified by sequence similarity; putative.
  
   
 0.798
DR_2155
Amino acid ABC transporter, permease protein; Similar to GB:AE000782 percent identity: 60.07; identified by sequence similarity; putative.
    
 0.777
mqnD
Conserved hypothetical protein; Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2); Belongs to the MqnA/MqnD family. MqnD subfamily.
       0.655
aspS2
aspartyl-tRNA synthetase, non-discriminating; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn). Is slightly more efficient at aminoacylating tRNA(Asn) over tRNA(Asp).
  
 
   0.651
DR_2118
Branched-chain amino acid ABC transporter, ATP-binding protein; Similar to GB:D12589 SP:P30294 GB:X52093 PID:217075 percent identity: 70.21; identified by sequence similarity; putative.
 
     
0.629
DR_2315
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.609
argS
arginyl-tRNA synthetase; Similar to GB:Pyro_h percent identity: 62.62; identified by sequence similarity; putative.
  
     0.608
DR_0095
ABC transporter, ATP-binding protein; Similar to PID:1651685 percent identity: 60.18; identified by sequence similarity; putative.
 
 0.541
DR_2469
ABC transporter, ATP-binding protein; Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity).
 
   
0.515
Your Current Organism:
Deinococcus radiodurans
NCBI taxonomy Id: 243230
Other names: D. radiodurans R1, Deinococcus radiodurans R1, Deinococcus radiodurans str. R1
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