STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR_1165Conserved hypothetical protein; Similar to PID:2276323 percent identity: 70.09; identified by sequence similarity; putative. (123 aa)    
Predicted Functional Partners:
DR_1163
Twitching motility protein; Similar to GB:AE000657 percent identity: 68.27; identified by sequence similarity; putative.
       0.768
panC
Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
       0.768
greA
Transcription elongation factor; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
       0.679
DR_0481
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.590
DR_1195
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.590
DR_1301
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.590
DR_1166
Hypothetical protein; Identified by Glimmer2; putative.
       0.529
DR_1557
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.505
DR_1167
dedA protein; Similar to GP:3367763 percent identity: 63.73; identified by sequence similarity; putative.
       0.471
Your Current Organism:
Deinococcus radiodurans
NCBI taxonomy Id: 243230
Other names: D. radiodurans R1, Deinococcus radiodurans R1, Deinococcus radiodurans str. R1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.