Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DR_1600Conserved hypothetical protein; Similar to PID:1621212 percent identity: 53.90; identified by sequence similarity; putative. (235 aa)    
Predicted Functional Partners:
DR_1599
Conserved hypothetical protein; Similar to SP:P55440 PID:2182385 percent identity: 61.06; identified by sequence similarity; putative; Belongs to the peptidase S1B family.
      0.976
DR_1598
Protease, putative; Similar to GB:AE000511 PID:2314155 percent identity: 46.00; identified by sequence similarity; putative; Belongs to the peptidase M16 family.
       0.466
DR_2497
Cell division protein, FtsW/RodA/SpoVE family; Similar to GB:L42023 SP:P45064 PID:1006465 PID:1221258 PID:1205382 percent identity: 51.30; identified by sequence similarity; putative; Belongs to the SEDS family.
    
   0.440
Your Current Organism:
Deinococcus radiodurans
NCBI taxonomy Id: 243230
Other names: D. radiodurans R1, Deinococcus radiodurans R1, Deinococcus radiodurans str. R1
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