STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR_1646Nitrogen regulator, putative; Similar to GB:AL123456 percent identity: 49.31; identified by sequence similarity; putative. (259 aa)    
Predicted Functional Partners:
DR_2362
Transcriptional regulator; Similar to GB:AL123456 percent identity: 51.16; identified by sequence similarity; putative.
  
  
0.938
DR_0997
Transcriptional regulator, FNR/CRP family; Similar to GB:M77207 SP:P29281 PID:1573982 percent identity: 49.70; identified by sequence similarity; putative.
  
   
 0.758
DR_1645
UDP-N-acetyl-D-mannosaminuronic acid transferase, putative; Similar to GB:M95047 SP:P37457 GB:X52093 PID:153897 percent identity: 56.50; identified by sequence similarity; putative; Belongs to the glycosyltransferase 26 family.
       0.591
DR_1929
Glycerol uptake facilitator protein; Similar to GB:AE000783 percent identity: 78.23; identified by sequence similarity; putative; Belongs to the MIP/aquaporin (TC 1.A.8) family.
   
 0.531
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.506
rpoC
DNA-directed RNA polymerase, beta` subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.498
DR_0648
Hypothetical protein; Identified by Glimmer2; putative.
   
 
 0.492
DR_1200
Hypothetical protein; Identified by Glimmer2; putative.
   
 
 0.492
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.465
rpoZ
Conserved hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits (By similarity).
    
 
 0.462
Your Current Organism:
Deinococcus radiodurans
NCBI taxonomy Id: 243230
Other names: D. radiodurans R1, Deinococcus radiodurans R1, Deinococcus radiodurans str. R1
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