STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR_1900Hypothetical protein; Identified by Glimmer2; putative. (212 aa)    
Predicted Functional Partners:
DR_1901
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.896
DR_1899
Hypothetical protein; Identified by Glimmer2; putative.
       0.732
DR_2544
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.563
DR_A0300
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.563
lutC
Conserved hypothetical protein; May function in L-lactate utilization; Belongs to the LutC/YkgG family.
      
 0.509
recD2
Exodeoxyribonuclease V, subunit RecD, putative; DNA-dependent ATPase (ssDNA better than dsDNA) and ATP- dependent 5'-3' DNA helicase. Appears to move along DNA in single base steps, powered by hydrolysis of 1 molecule of ATP. Has low processivity; short (20 bp) substrates with 5'-overhangs or forked ends are the best substrates, is much less efficient on 52 or 76 bp substrates with 5'- overhangs. The presence of single-stranded DNA- binding protein (SSB) increases unwinding 4-5 fold. Has no activity on blunt DNA or DNA with 3'-overhangs. Requires at least 10 bases of 5'- ssDNA for heli [...]
       0.431
Your Current Organism:
Deinococcus radiodurans
NCBI taxonomy Id: 243230
Other names: D. radiodurans R1, Deinococcus radiodurans R1, Deinococcus radiodurans str. R1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.