STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR_1963Twitching mobility protein; Similar to SP:P24559 GB:X67095 PID:151490 percent identity: 71.30; identified by sequence similarity; putative. (420 aa)    
Predicted Functional Partners:
DR_2065
Prepilin peptidase, type IV; Similar to PID:1651714 percent identity: 62.89; identified by sequence similarity; putative.
 
   
 0.895
DR_1964
General secretion pathway protein E; Similar to GB:AE000657 percent identity: 67.99; identified by sequence similarity; putative.
 
  
0.848
DR_0770
Fimbrial assembly protein PilM, putative; Similar to GB:U12892 PID:530856 percent identity: 53.56; identified by sequence similarity; putative.
 
   
 0.841
DR_1863
Pilin biogenesis protein; Similar to GB:M32066 SP:P22609 PID:151066 percent identity: 64.91; identified by sequence similarity; putative.
 
  
 0.806
DR_0548
Pilin, type IV, putative; Similar to GB:L35847 PID:532491 percent identity: 47.48; identified by sequence similarity; putative.
 
  
 0.792
DR_1854
Competence protein ComEC/Rec2, putative; Similar to GB:L15202 SP:P39695 PID:289262 PID:1303798 GB:AL009126 percent identity: 53.51; identified by sequence similarity; putative.
     
 0.694
DR_0772
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.627
DR_0771
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.590
DR_0774
General secretion pathway protein D, putative; Could be part of the type IV piliation system (T4P). May contribute at the cohesion between the S-layer and the outer membrane by forming oligomers. Could also be the main channel through which trafficking is managed; Belongs to the bacterial secretin family.
  
   
 0.590
DR_1855
Competence protein ComEA-related protein; Similar to PID:1001613 PID:1001681 percent identity: 56.70; identified by sequence similarity; putative.
     
 0.557
Your Current Organism:
Deinococcus radiodurans
NCBI taxonomy Id: 243230
Other names: D. radiodurans R1, Deinococcus radiodurans R1, Deinococcus radiodurans str. R1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.