STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR_2000mccF protein, putative; Similar to PID:682770 percent identity: 53.36; identified by sequence similarity; putative. (257 aa)    
Predicted Functional Partners:
murC
UDP-N-acetylmuramate--alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
    
 0.605
DR_0176
D-alanyl-D-alanine carboxypeptidase, putative; Similar to GB:X64790 SP:P39045 PID:38767 percent identity: 50.29; identified by sequence similarity; putative.
 
   
 0.524
DR_1919
Conserved hypothetical protein; Similar to GB:X79146 PID:499196 percent identity: 67.68; identified by sequence similarity; putative.
  
     0.475
DR_1999
Conserved hypothetical protein; Similar to GB:AL009126 percent identity: 57.14; identified by sequence similarity; putative.
       0.453
DR_2356
MutT/nudix family protein; Similar to PID:1651732 percent identity: 52.25; identified by sequence similarity; putative.
 
    0.421
DR_2432
Conserved hypothetical protein; Similar to PID:1652130 percent identity: 51.26; identified by sequence similarity; putative.
 
    0.404
Your Current Organism:
Deinococcus radiodurans
NCBI taxonomy Id: 243230
Other names: D. radiodurans R1, Deinococcus radiodurans R1, Deinococcus radiodurans str. R1
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