| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| rplA | rplC | DR_2045 | DR_0311 | Ribosomal protein L1; Binds directly to 23S rRNA. Forms the L1 stalk. Unlike the case in the Thermus thermophilus 70S ribosome, this protein is not seen to block the exit path of the E site tRNA. It is clear that the protein in the structure is flexible however, so this is probably due to its position in these crystals. | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.999 |
| rplA | rplI | DR_2045 | DR_0102 | Ribosomal protein L1; Binds directly to 23S rRNA. Forms the L1 stalk. Unlike the case in the Thermus thermophilus 70S ribosome, this protein is not seen to block the exit path of the E site tRNA. It is clear that the protein in the structure is flexible however, so this is probably due to its position in these crystals. | Ribosomal protein L9; Binds to the 23S rRNA and protein L31; Belongs to the bacterial ribosomal protein bL9 family. | 0.992 |
| rplA | rplK | DR_2045 | DR_2046 | Ribosomal protein L1; Binds directly to 23S rRNA. Forms the L1 stalk. Unlike the case in the Thermus thermophilus 70S ribosome, this protein is not seen to block the exit path of the E site tRNA. It is clear that the protein in the structure is flexible however, so this is probably due to its position in these crystals. | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.999 |
| rplA | rplL | DR_2045 | DR_2043 | Ribosomal protein L1; Binds directly to 23S rRNA. Forms the L1 stalk. Unlike the case in the Thermus thermophilus 70S ribosome, this protein is not seen to block the exit path of the E site tRNA. It is clear that the protein in the structure is flexible however, so this is probably due to its position in these crystals. | Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation (Probable); Belongs to the bacterial ribosomal protein bL12 family. | 0.999 |
| rplA | rplM | DR_2045 | DR_0174 | Ribosomal protein L1; Binds directly to 23S rRNA. Forms the L1 stalk. Unlike the case in the Thermus thermophilus 70S ribosome, this protein is not seen to block the exit path of the E site tRNA. It is clear that the protein in the structure is flexible however, so this is probably due to its position in these crystals. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit (By similarity). Binds to the 23S rRNA. | 0.999 |
| rplA | rplS | DR_2045 | DR_0755 | Ribosomal protein L1; Binds directly to 23S rRNA. Forms the L1 stalk. Unlike the case in the Thermus thermophilus 70S ribosome, this protein is not seen to block the exit path of the E site tRNA. It is clear that the protein in the structure is flexible however, so this is probably due to its position in these crystals. | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site (By similarity). Binds the 23S rRNA. Belongs to the bacterial ribosomal protein bL19 family. | 0.998 |
| rplA | rplT | DR_2045 | DR_2004 | Ribosomal protein L1; Binds directly to 23S rRNA. Forms the L1 stalk. Unlike the case in the Thermus thermophilus 70S ribosome, this protein is not seen to block the exit path of the E site tRNA. It is clear that the protein in the structure is flexible however, so this is probably due to its position in these crystals. | Ribosomal protein L20; Binds directly to 23S rRNA, probably serving to organize its structure; Belongs to the bacterial ribosomal protein bL20 family. | 0.999 |
| rplA | rplU | DR_2045 | DR_0086 | Ribosomal protein L1; Binds directly to 23S rRNA. Forms the L1 stalk. Unlike the case in the Thermus thermophilus 70S ribosome, this protein is not seen to block the exit path of the E site tRNA. It is clear that the protein in the structure is flexible however, so this is probably due to its position in these crystals. | Ribosomal protein L21; Binds directly to 23S rRNA, probably serving to organize its structure; Belongs to the bacterial ribosomal protein bL21 family. | 0.998 |
| rplA | rpmA | DR_2045 | DR_0085 | Ribosomal protein L1; Binds directly to 23S rRNA. Forms the L1 stalk. Unlike the case in the Thermus thermophilus 70S ribosome, this protein is not seen to block the exit path of the E site tRNA. It is clear that the protein in the structure is flexible however, so this is probably due to its position in these crystals. | Ribosomal protein L27; Binds the 5S and 23S rRNAs and also the tRNA in the P site; Belongs to the bacterial ribosomal protein bL27 family. | 0.998 |
| rplA | rpmI | DR_2045 | DR_2005 | Ribosomal protein L1; Binds directly to 23S rRNA. Forms the L1 stalk. Unlike the case in the Thermus thermophilus 70S ribosome, this protein is not seen to block the exit path of the E site tRNA. It is clear that the protein in the structure is flexible however, so this is probably due to its position in these crystals. | Ribosomal protein L35; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL35 family. | 0.997 |
| rplC | rplA | DR_0311 | DR_2045 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L1; Binds directly to 23S rRNA. Forms the L1 stalk. Unlike the case in the Thermus thermophilus 70S ribosome, this protein is not seen to block the exit path of the E site tRNA. It is clear that the protein in the structure is flexible however, so this is probably due to its position in these crystals. | 0.999 |
| rplC | rplI | DR_0311 | DR_0102 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L9; Binds to the 23S rRNA and protein L31; Belongs to the bacterial ribosomal protein bL9 family. | 0.998 |
| rplC | rplK | DR_0311 | DR_2046 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.999 |
| rplC | rplL | DR_0311 | DR_2043 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation (Probable); Belongs to the bacterial ribosomal protein bL12 family. | 0.998 |
| rplC | rplM | DR_0311 | DR_0174 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit (By similarity). Binds to the 23S rRNA. | 0.999 |
| rplC | rplS | DR_0311 | DR_0755 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site (By similarity). Binds the 23S rRNA. Belongs to the bacterial ribosomal protein bL19 family. | 0.999 |
| rplC | rplT | DR_0311 | DR_2004 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L20; Binds directly to 23S rRNA, probably serving to organize its structure; Belongs to the bacterial ribosomal protein bL20 family. | 0.998 |
| rplC | rplU | DR_0311 | DR_0086 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L21; Binds directly to 23S rRNA, probably serving to organize its structure; Belongs to the bacterial ribosomal protein bL21 family. | 0.998 |
| rplC | rpmA | DR_0311 | DR_0085 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L27; Binds the 5S and 23S rRNAs and also the tRNA in the P site; Belongs to the bacterial ribosomal protein bL27 family. | 0.998 |
| rplC | rpmI | DR_0311 | DR_2005 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L35; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL35 family. | 0.997 |
