STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR_2070Membrane lipoprotein; Similar to SP:P29724 GB:X57836 PID:581809 GB:AE000520 percent identity: 57.28; identified by sequence similarity; putative. (379 aa)    
Predicted Functional Partners:
DR_0957
Sugar ABC transporter, ATP-binding protein; Similar to GB:AL009126 percent identity: 66.27; identified by sequence similarity; putative.
 
 0.986
DR_0250
Conserved hypothetical protein; Similar to GB:AL009126 percent identity: 62.46; identified by sequence similarity; putative; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.973
ligA
DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
       0.578
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.462
DR_2068
Alkaline shock protein-related protein; Similar to GB:AL009126 percent identity: 60.66; identified by sequence similarity; putative.
       0.427
nusB
N-utilization substance protein B; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
       0.410
DR_2177
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
 
   
 0.408
Your Current Organism:
Deinococcus radiodurans
NCBI taxonomy Id: 243230
Other names: D. radiodurans R1, Deinococcus radiodurans R1, Deinococcus radiodurans str. R1
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