Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DR_2154Amino acid ABC transporter, periplasmic amino acid-binding protein; Similar to GB:U00096 SP:P39174 PID:1736579 PID:1736587 PID:1788228 percent identity: 57.69; identified by sequence similarity; putative; Belongs to the bacterial solute-binding protein 3 family. (305 aa)    
Predicted Functional Partners:
DR_2155
Amino acid ABC transporter, permease protein; Similar to GB:AE000782 percent identity: 60.07; identified by sequence similarity; putative.
 0.995
DR_1028
Amino acid ABC transporter, permease protein; Similar to GB:AE000782 percent identity: 74.52; identified by sequence similarity; putative.
 
 0.974
DR_0565
Amino acid ABC transporter, permease protein; Similar to SP:P42399 PID:710628 PID:1805409 GB:AL009126 percent identity: 72.22; identified by sequence similarity; putative.
 
 0.956
DR_2277
Amino acid ABC transporter, permease protein; Similar to GB:AE000782 percent identity: 66.67; identified by sequence similarity; putative.
 
 0.956
DR_0822
Oxidoreductase, short-chain dehydrogenase/reductase family; Similar to GB:Pyro_h percent identity: 57.85; identified by sequence similarity; putative.
    
 
 0.857
DR_1943
3-oxoacyl-acyl carrier protein reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 
 0.857
DR_1648
Amino acid ABC transporter, ATP-binding protein; Similar to PID:1154897 percent identity: 75.74; identified by sequence similarity; putative.
 
 
 0.847
DR_2153
Sugar ABC transportor, ATP-binding protein; Similar to GP:3688811 percent identity: 74.03; identified by sequence similarity; putative; Belongs to the ABC transporter superfamily.
  
  
 0.763
rpmH
Ribosomal protein L34; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL34 family.
  
    0.477
Your Current Organism:
Deinococcus radiodurans
NCBI taxonomy Id: 243230
Other names: D. radiodurans R1, Deinococcus radiodurans R1, Deinococcus radiodurans str. R1
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