STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR_2614Hypothetical protein; Identified by Glimmer2; putative. (250 aa)    
Predicted Functional Partners:
panB
3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.
       0.601
DR_0295
Phosphoprotein phosphatase; Similar to GB:U00096 SP:P55798 PID:1736483 PID:1788143 PID:2039141 percent identity: 52.70; identified by sequence similarity; putative.
       0.504
DR_0296
Hypothetical protein; Identified by Glimmer2; putative.
       0.504
DR_2616
Conserved hypothetical protein; Similar to GB:AE000657 percent identity: 67.18; identified by sequence similarity; putative.
       0.485
DR_2613
Hydrolase, CbbY/CbbZ/GpH/YieH family; Similar to PID:1239999 SP:P54607 GB:AL009126 percent identity: 61.14; identified by sequence similarity; putative.
     
 0.446
Your Current Organism:
Deinococcus radiodurans
NCBI taxonomy Id: 243230
Other names: D. radiodurans R1, Deinococcus radiodurans R1, Deinococcus radiodurans str. R1
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