Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
GSU0011ABC transporter, ATP-binding protein. (308 aa)    
Predicted Functional Partners:
GSU0008
Response receiver sensor histidine kinase, PAS domain-containing; Domains: REC, PAS, HisKA, HATPase_c.
  
  
 0.791
fgrL
Domains: REC, PAS, GAF, HisKA, HATPase_c.
  
  
 0.787
GSU0007
Sensor histidine kinase, HAMP and PAS domain-containing; Domains: HAMP, PAS, HisKA, HATPase_c.
  
  
 0.776
fgrK
Sensor histidine kinase of FgrL, PAS domain-containing; Domains: PAS, HisKA, HATPase_c.
  
    0.773
GSU3455
ABC transporter, membrane protein, ABC-2 family.
 
  
 0.744
ybhS
ABC transporter, membrane protein.
  
 0.711
ybhR
ABC transporter, membrane protein.
  
 0.677
gpsA
Glycerol-3-phosphate dehydrogenase, NAD(P)-dependent; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
  
  
 0.535
GSU0093
ABC transporter, ATP-binding/membrane protein.
  
 0.529
GSU0101
ABC transporter, ATP-binding/membrane protein.
  
 0.529
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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