Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GSU0013Winged helix-turn-helix transcriptional regulator, MarR family. (142 aa)    
Predicted Functional Partners:
hemY
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
  
    0.655
cheW40H-1
Scaffold protein CheW associated with MCPs of class 40H.
   
  
 0.591
cheA40H
Sensor histidine kinase CheA associated with MCPs of class 40H.
      
 0.582
GSU0014
DnaJ-related molecular chaperone.
  
  
 0.581
mcp40H-1
GAF sensor methyl-accepting chemotaxis sensory transducer, class 40H.
      
 0.581
efp-2
Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
  
   
 0.485
GSU1870
Sensor diguanylate cyclase, GAF domain-containing; Domains: GAF, GGDEF.
  
 
 0.463
GSU3029
[acyl-]glycerolphosphate acyltransferase and acyl-(acyl carrier protein) ligase, major facilitator superfamily domain-containing.
 
  
 0.455
yjeK
Translation elongation factor P-lysyl-lysine 2,3-aminomutase.
  
  
 0.421
GSU2643
Lipoprotein cytochrome c; 5 heme-binding sites.
      
 0.402
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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