Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GSU0018Helix-turn-helix transcriptional regulator with aminotransferase domain, GntR family. (478 aa)    
Predicted Functional Partners:
hdrA
Heterodisulfide oxidoreductase, FAD-binding and iron-sulfur cluster-binding subunit A.
    
   0.738
GSU1620
Protein of unknown function, DUF162 and CCG domain pair-containing.
    
   0.738
yqfO
Dimetal-binding protein YqfO; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
   
    0.648
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
  
    0.584
por
Pyruvate:ferredoxin/flavodoxin oxidoreductase.
   
   0.548
GSU3387
Cupin superfamily barrel domain helix-turn-helix transcriptional regulator, AraC/XylS family.
  
  
 0.530
GSU1621
Protein of unknown function, DUF162-containing.
  
   0.503
GSU0019
Pentapeptide repeat domain protein.
  
    0.458
GSU0016
Peptidylprolyl cis-trans isomerase lipoprotein, PpiC-type.
       0.445
pheA
Chorismate mutase and prephenate dehydratase.
  
  
 0.420
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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