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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GSU0018Helix-turn-helix transcriptional regulator with aminotransferase domain, GntR family. (478 aa)    
Predicted Functional Partners:
GSU1620
Protein of unknown function, DUF162 and CCG domain pair-containing.
   
   0.804
hdrA
Heterodisulfide oxidoreductase, FAD-binding and iron-sulfur cluster-binding subunit A.
   
   0.793
por
Pyruvate:ferredoxin/flavodoxin oxidoreductase.
   
   0.602
yqfO
Dimetal-binding protein YqfO; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
   
    0.590
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
  
    0.584
GSU1621
Protein of unknown function, DUF162-containing.
  
   0.556
GSU3387
Cupin superfamily barrel domain helix-turn-helix transcriptional regulator, AraC/XylS family.
  
  
 0.533
GSU0523
Pyridoxal-5'-phosphate-dependent chorismate-binding enzyme, putative.
  
 
 0.501
GSU3247
Iron-sulfur cluster-binding oxidoreductase.
   
   0.497
frx-1
Ferredoxin.
    
   0.495
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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