Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GSU0019Pentapeptide repeat domain protein. (292 aa)    
Predicted Functional Partners:
GSU3417
Dioxygenase, putative.
  
    0.527
GSU2248
Hypothetical protein.
  
  
 0.486
GSU0018
Helix-turn-helix transcriptional regulator with aminotransferase domain, GntR family.
  
    0.458
GSU1870
Sensor diguanylate cyclase, GAF domain-containing; Domains: GAF, GGDEF.
  
  
 0.444
GSU3191
TPR domain protein.
 
  
 0.436
GSU0869
Protein of unknown function, LysM, LysM and NLPC_P60 domain-containing; Domains: LysM, LysM, NLPC_P60.
   
 
 0.413
atpA
ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.
    
   0.409
gapA
Glyceraldehyde-3-phosphate dehydrogenase, type I; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
   0.408
GSU1010
Lytic transglycosylase, SLT, LysM and LysM domain-containing; Domains: SLT, LysM, LysM.
   
 
 0.400
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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