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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GSU0026Periplasmic energy transduction protein, TonB-related protein. (246 aa)    
Predicted Functional Partners:
GSU0027
Biopolymer transport membrane protein, TolR-related protein.
  
 
 0.987
GSU0028
Biopolymer transport membrane proton channel, TolQ-related protein.
  
 
 0.982
tolB
Biopolymer transport periplasmic beta-propeller repeat protein, TolB-related protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.918
GSU2982
Ligand-gated TonB-dependent outer membrane channel.
  
 
 0.888
GSU0883
Ligand-gated TonB-dependent outer membrane channel.
  
 
 0.784
GSU1445
Ligand-gated TonB-dependent outer membrane channel.
   
 
 0.781
pal
Peptidoglycan-binding outer membrane lipoprotein Pal, OmpA family; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.641
GSU1646
Lipoprotein, putative.
   
 
 0.543
GSU0029
Nitrilase/amidohydrolase superfamily protein, class 5.
       0.541
flgF
Flagellar basal body rod protein FlgF; Belongs to the flagella basal body rod proteins family.
    
   0.461
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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