Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GSU0027Biopolymer transport membrane protein, TolR-related protein. (139 aa)    
Predicted Functional Partners:
GSU0028
Biopolymer transport membrane proton channel, TolQ-related protein.
 
 
 0.999
GSU0026
Periplasmic energy transduction protein, TonB-related protein.
  
 
 0.986
tolB
Biopolymer transport periplasmic beta-propeller repeat protein, TolB-related protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
  
 0.962
pilQ
Type IV pilus secretin lipoprotein PilQ; Belongs to the bacterial secretin family.
 
 
 0.955
GSU0858
Periplasmic energy transduction protein, TonB-related protein.
  
 
 0.931
GSU2981
Periplasmic energy transduction protein, TonB-related protein.
  
 
 0.931
pal
Peptidoglycan-binding outer membrane lipoprotein Pal, OmpA family; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.810
cpoB
TPR domain lipoprotein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
 
  
 0.760
yaeT
Outer membrane protein assembly complex protein YaeT; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
  
 0.722
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
  
 
 0.719
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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