Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GSU0044Hypothetical protein. (2117 aa)    
Predicted Functional Partners:
GSU0045
Hypothetical protein.
 
    0.930
GSU1698
TPR domain protein.
  
   0.692
GSU2513
Lipoprotein cytochrome c, 1 heme-binding site.
  
 
 0.541
GSU1870
Sensor diguanylate cyclase, GAF domain-containing; Domains: GAF, GGDEF.
  
 
 0.521
GSU0047
ATP/GTP-binding transposition helper of ISGsu6, IS21 family.
       0.517
GSU0046
Transposase of ISGsu6, IS21 family.
       0.516
GSU0048
Integrase.
  
  
 0.511
GSU1947
Hypothetical protein.
  
 
 0.506
GSU1540
Lipoprotein, putative.
 
 
 0.504
GSU0897
Protein 3-oxoalanine-generating enzyme family protein.
  
 
 0.480
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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