Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GSU0048Integrase. (278 aa)    
Predicted Functional Partners:
GSU0047
ATP/GTP-binding transposition helper of ISGsu6, IS21 family.
 
     0.796
GSU0046
Transposase of ISGsu6, IS21 family.
 
     0.793
GSU0556
Transposase of ISGsu7.
  
     0.772
GSU0761
Transposase of ISGsu7.
  
     0.772
GSU1356
Transposase of ISGsu7.
  
     0.772
GSU1848
Transposase of ISGsu7.
  
     0.772
GSU2128
Transposase of ISGsu7.
  
     0.772
GSU2140
Transposase of ISGsu7.
  
     0.772
GSU2171
Transposase of ISGsu7.
  
     0.772
GSU2279
Transposase of ISGsu7.
  
     0.772
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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