Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GSU0068Cytochrome c; 4 heme-binding sites. (160 aa)    
Predicted Functional Partners:
GSU0070
Oxidoreductase, membrane subunit.
 
    0.962
GSU0069
Oxidoreductase, iron-sulfur cluster-binding subunit.
 
    0.923
omcA
Cytochrome c; 27 heme-binding sites.
  
    0.777
omcO
Cytochrome c; 27 heme-binding sites.
  
    0.777
GSU1648
Cytochrome c; 5 heme-binding sites.
 
  
 0.770
GSU1786
Cytochrome c; 8 heme-binding sites.
  
    0.768
omcH
Cytochrome c; 24 heme-binding sites.
  
    0.762
GSU2903
ABC transporter, periplasmic substrate-binding lipoprotein.
  
    0.754
GSU0616
Cytochrome c; 8 heme-binding sites.
 
     0.743
GSU0702
Lipoprotein cytochrome c; 35 heme-binding sites.
  
     0.730
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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