Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
GSU0078PilZ domain protein. (113 aa)    
Predicted Functional Partners:
GSU1037
Response receiver-modulated diguanylate cyclase/phosphodiesterase; Domains: REC, GGDEF, EAL.
    
 
 0.880
GSU0537
Sensor diguanylate cyclase/phosphodiesterase, PAS domain-containing; Domains: PAS, GGDEF, EAL.
    
   0.879
GSU2511
Sensor diguanylate cyclase/phosphodiesterase, CHASE4 and PAS domain-containing; Domains: CHASE4, PAS, GGDEF, EAL.
    
   0.879
GSU0077
Hypothetical protein.
  
    0.786
GSU2828
Diguanylate cyclase; Domains: GGDEF.
   
 
 0.751
GSU2185
FlgM family protein.
   
  
 0.644
GSU3356
Diguanylate cyclase, HAMP domain-containing; Domains: HAMP, GGDEF.
   
  
 0.623
fliC
Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
   
  
 0.584
GSU0076
Hypothetical protein.
  
    0.557
GSU2193
Ferritin-like domain protein.
   
  
 0.530
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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