Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
GSU0079Helix-turn-helix transcriptional regulator with cupin domain. (196 aa)    
Predicted Functional Partners:
GSU3109
Helix-turn-helix transcriptional regulator, IclR family.
  
  
 0.645
GSU1522
Transcriptional regulator, MerR family.
  
  
 0.642
GSU0514
Helix-turn-helix transcriptional regulator, IclR family.
  
  
 0.637
GSU2354
Helix-turn-helix transcriptional regulator, IclR family.
  
  
 0.634
rpsQ
Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
    0.626
GSU2287
Response regulator, putative; Domains: REC.
   
    0.613
GSU0625
Helix-turn-helix transcriptional regulator, putative.
   
 
 0.605
GSU2033
Helix-turn-helix transcriptional regulator, XRE family.
  
  
 0.602
GSU1863
Transcriptional regulator, Ros/MucR family.
   
  
 0.593
GSU2523
Helix-turn-helix transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
   
  
 0.591
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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