Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GSU0084Amino acid aminotransferase, putative. (391 aa)    
Predicted Functional Partners:
putA
Proline dehydrogenase and Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
  
 
 0.824
GSU0083
Laccase family multicopper oxidase; Belongs to the multicopper oxidase YfiH/RL5 family.
  
    0.759
rluD
23S rRNA synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
  
    0.756
mrpA
Sodium/proton antiporter complex Mrp, protein A.
   
    0.628
GSU3515
Hypothetical protein.
  
     0.628
GSU0962
Sensor histidine kinase, HAMP domain-containing; Domains: HAMP, HisKA, HATPase_c.
  
     0.564
GSU0081
Hypothetical protein.
  
    0.526
gltS
ferredoxin/NAD(P)H-dependent glutamate synthase, large subunit.
     
 0.515
GSU0231
Hypothetical protein.
  
    0.465
GSU0594
Cytochrome c; 7 heme-binding sites.
  
     0.458
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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