Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GSU0165Hypothetical protein. (451 aa)    
Predicted Functional Partners:
GSU2377
Hypothetical protein.
   
    0.923
GSU2132
Hypothetical protein.
   
    0.903
GSU3475
Hypothetical protein.
       0.809
GSU2131
Hypothetical protein.
   
    0.775
ihfA-2
Integration host factor, alpha subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
   
    0.771
GSU1854
NDP-N-acetyl-D-galactosamine 6-dehydrogenase, putative; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
   
    0.696
GSU0167
Transposase, Y1_Tnp domain-containing.
  
    0.685
vorD
2-oxoacid:ferredoxin oxidoreductase, ferredoxin subunit.
   
    0.674
GSU1510.1
Glycosyltransferase.
   
    0.600
GSU0164
Hypothetical protein.
  
    0.594
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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