Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GSU0359Sigma-54-dependent sensor transcriptional regulator, PAS domain-containing; Domains: PAS, sigma54 interaction, HTH8. (458 aa)    
Predicted Functional Partners:
rpoN
RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.771
flhG
Flagellar biogenesis ATPase FlhG.
  
 
 0.499
GSU0360
Peptidoglycan-binding outer membrane protein, OMP_b-brl and OmpA domain-containing; Domains: OMP_b-brl, OmpA.
  
    0.448
GSU1990
Sensor histidine kinase, NtrB-related protein; Domains: HisKA, HATPase_c.
 
 
 0.438
gnfL
Nitrogen fixation master sensor histidine kinase, PAS domain-containing; Domains: PAS, HisKA, HATPase_c.
  
 
 0.419
GSU1768
ParA family protein.
  
 
 0.411
GSU0358
Periplasmic nitrate reductase, iron-sulfur cluster-binding subunit, putative.
  
  
 0.410
GSU3216
Sensor histidine kinase; Domains: HATPase_c.
 
   0.409
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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