Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GSU0366Helix-turn-helix XRE domain protein. (306 aa)    
Predicted Functional Partners:
yhcC-1
Radical SAM domain iron-sulfur cluster-binding oxidoreductase, TIGR01212 family.
  
    0.793
GSU1806
YbbR domain protein.
  
     0.761
GSU0317
Hypothetical protein.
  
     0.727
GSU0899
Hypothetical protein.
  
    0.709
GSU0698
HEAT-like repeat-containing protein.
  
    0.662
GSU1863
Transcriptional regulator, Ros/MucR family.
  
   
 0.645
GSU2941
Helix-turn-helix transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
  
 0.645
sbcC-2
DNA repair exonuclease SbcCD, C subunit, putative.
 
    0.635
GSU2523
Helix-turn-helix transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
   
  
 0.625
GSU0625
Helix-turn-helix transcriptional regulator, putative.
   
 
 0.605
Your Current Organism:
Geobacter sulfurreducens
NCBI taxonomy Id: 243231
Other names: G. sulfurreducens PCA, Geobacter sulfurreducens PCA, Geobacter sulfurreducens str. PCA, Geobacter sulfurreducens strain PCA
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